Running in Jupyter Lab breaks visualization

biocore / calour

exploratory and interactive microbiome analyses based on heatmaps

BSD 3-Clause "New" or "Revised" License

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Open tanaes opened 6 years ago

tanaes commented 6 years ago

At least for me, switching to the Jupyter Lab interface broke heatmap visualization.

I was able to get widgets to display by using the following:

conda update -c conda-forge ipywidgets
jupyter labextension install @jupyter-widgets/jupyterlab-manager

But heatmaps still did not display, using either jupyter or cli options for gui.

Any thoughts?

amnona commented 3 years ago

calour now works with jupyter lab v3.0 (it requires ipympl) just use: %matplotlib widget

see ipympl installation instructions at: https://github.com/matplotlib/ipympl