Struggling to Figure Out The Structure of Biom File

biocore / calour

exploratory and interactive microbiome analyses based on heatmaps

BSD 3-Clause "New" or "Revised" License

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Struggling to Figure Out The Structure of Biom File #287

Closed hlee885 closed 1 year ago

hlee885 commented 1 year ago

Hi,

I have been following the dbbact calour tutorial and having hard time to figure out the structure of biom format. In the website, it is using biom file and text file both to load the data.

dat=ca.read_amplicon('data/chronic-fatigue-syndrome.biom',
                     'data/chronic-fatigue-syndrome.sample.txt',
                     normalize=10000,min_reads=1000)

I was wondering if I can have some help in terms of the structure of .biom format in this tutorial. I hope to hear from any of you soon.

Thank you, -Jin

amnona commented 1 year ago

Dear Jin, please see response (and continue the discussion) here in the dbbact forum.