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biocore
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calour
exploratory and interactive microbiome analyses based on heatmaps
BSD 3-Clause "New" or "Revised" License
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norm() for heatmap - maybe supply also a string option for "linear" or "log"
#259
amnona
opened
2 years ago
0
io.read() has the sep='\t' set so cannot re-set it in the sample_metadata_kwargs
#258
amnona
opened
2 years ago
0
warning for changing colormap for heatmap when doing plot()
#257
amnona
closed
2 years ago
0
feat: support https on the exported heatmap
#256
amnona
closed
3 years ago
1
Fix sample_in_row for read_ms
#255
amnona
closed
2 years ago
0
fix dbbact-calour version testing
#254
amnona
closed
3 years ago
0
testing for travis - do not merge
#253
amnona
closed
1 week ago
0
Dbbact version
#252
amnona
closed
3 years ago
1
export_heatmap enable different field for taxonomy and heatmap y-axis
#251
amnona
opened
3 years ago
0
Db fix
#250
amnona
closed
3 years ago
1
feat(export_html.py): update heatmap low color to black and remove **kwargs
#249
amnona
closed
3 years ago
0
make html export use https for obtaining dsj3
#248
amnona
closed
3 years ago
0
please ignore - testing
#247
amnona
closed
3 years ago
0
please ignore - Test travis
#246
amnona
closed
3 years ago
0
Byebye skbio
#245
amnona
closed
3 years ago
1
fix bug when not using all samples in paired test
#244
amnona
closed
3 years ago
1
first and last feature in heatmap
#243
amnona
opened
3 years ago
0
normalize diff_abundance results with rank to -1/1
#242
amnona
opened
3 years ago
0
Paired groups
#241
amnona
closed
3 years ago
2
fix bar_label_kwargs so rotation works
#240
amnona
opened
3 years ago
4
fix bug:"numpy.ndarray" object has no attribute "median"
#239
maque4004
closed
3 years ago
0
add cmd+click to selection
#238
amnona
closed
3 years ago
0
add 'cmd' in addition to 'super' for heatmap multiple selection
#237
amnona
closed
3 years ago
1
summarize warning if lots of samples not found in read()
#236
amnona
closed
2 years ago
0
Paired testing for diff. abundance
#235
amnona
closed
3 years ago
1
Add an option to read metadata from csv files
#234
baobabprince
opened
3 years ago
0
inplace in join_metadata_fields is True by default
#233
amnona
closed
2 years ago
0
filter_mean_abundance on unnormalized data
#232
amnona
opened
3 years ago
0
bug in join_metadata_fields
#231
amnona
closed
2 years ago
0
fix debug message in delete sequence from annotation
#230
amnona
closed
3 years ago
1
problem with plot normalization for non ampliconexperiment
#229
amnona
opened
3 years ago
0
add value to Experiment.iterate()
#228
amnona
closed
3 years ago
1
Delete a line of duplicate content
#227
SJ-Wang-tech
closed
3 years ago
2
Correct the error
#226
SJ-Wang-tech
closed
3 years ago
0
add values to experiment.iterate
#225
amnona
closed
3 years ago
1
update __version__
#224
amnona
closed
2 years ago
0
add per row normalization to heatmap
#223
amnona
opened
4 years ago
0
move reorder() to avoid `axis` function argument not converted and avoid its running not recorded
#222
RNAer
closed
4 years ago
0
add random_seed to permute_data
#221
amnona
closed
4 years ago
0
fix cluster_features() bug
#220
RNAer
closed
4 years ago
1
Ratio experiment
#219
amnona
closed
4 years ago
2
add Experiment.iterate()
#218
amnona
closed
4 years ago
1
Experiment.reorder() is not getting the axis correctly
#217
amnona
closed
4 years ago
1
cluster_features broken
#216
amnona
closed
4 years ago
0
Heatmap nan
#215
amnona
closed
4 years ago
2
make skbio dependance optional
#214
amnona
closed
4 years ago
1
Ms1 experiment
#213
amnona
closed
4 years ago
4
get rid of skbio
#212
amnona
opened
4 years ago
0
change random_seed to random_state
#211
amnona
closed
4 years ago
3
fix mannwhitney warning
#210
amnona
closed
4 years ago
0
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