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biocore / deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.
BSD 3-Clause "New" or "Revised" License
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[BUG] Replace dash in fasta file output of debular command #194

Open suzuki-shm opened 5 years ago

suzuki-shm commented 5 years ago

When I used remove-chimeras-denovo command after using deblur-seqs following the pipeline proposed in supplementary figure of deblur paper, the output is missing. As debular.log only said the error happens, I directly used vsearch command described in the script and got a message that this file is not compatible with vsearch because of invalid character of "-". This character is removed by workflow command, but it is not by deblur-seqs. I added the line into the function to delete the character.

coveralls commented 5 years ago

Coverage Status

Coverage remained the same at 88.911% when pulling a0fb6c64e51a295ce46da850bd4dda17f7875ed6 on TaskeHAMANO:feature/deblur_cmd into 4b4badccdbac8fe9d8f8b3f1349f3700e31b5d7b on biocore:master.