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biocore / deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.
BSD 3-Clause "New" or "Revised" License
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DEP: update mafft pin #202

Closed thermokarst closed 2 years ago

thermokarst commented 4 years ago

Cross reference: https://github.com/qiime2/q2-alignment/pull/68

thermokarst commented 4 years ago

Man, travis is barfing on skbio && pandas 1.0 && biom-format --- we need to sort out pandas and biom...

wasade commented 4 years ago

Pandas 1.0 had issues with sparse support so we weren't able to readily support it in biom. More detail in biocore/biom-format#838

thermokarst commented 4 years ago

Thanks @wasade, that was actually the PR I had in mind! Sorting that out is pretty high on our todo list - this biom issue is blocking QIIME 2 from adopting pandas 1.0 at the moment. I'll continue this discussion over on https://github.com/biocore/biom-format.

thermokarst commented 2 years ago

Superseded by https://github.com/biocore/deblur/pull/212