What kind of data was used in deblur?

biocore / emp

Code repository of the Earth Microbiome Project.

http://www.earthmicrobiome.org

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Open YulinzhangSia opened 3 years ago

YulinzhangSia commented 3 years ago

Dear administrator,

I just want to know which data did you use when you handled the EMP data with deblur (emp_deblur_90bp.subset_10k.rare_5000_match.tsv)?

The single-end data with the forward or reverse? Or pair-end data?

Regards, Yulin

cuttlefishh commented 3 years ago

Hi Yulin,

Everything here is from single-end forward reads. The Deblur output were trimmed to 90bp, 100bp, or 150bp, depending on the dataset.

Good luck! Luke