Error in emperor: Samples missing in final visualization

biocore / emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

http://biocore.github.io/emperor/

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Error in emperor: Samples missing in final visualization #778

Closed MrX-NGS closed 4 years ago

MrX-NGS commented 4 years ago

Hi,

I find only 23 samples in the final visualization instead of 66 samples. I used the below commands in qiime 1.9.1 conda environment as below with emperor installed in the environment:

make_emperor.py -i binary_jaccard_pc.txt -m map.e500.fmt.fmt.fmt.txt -o final_plot zip -r emperor_plots.zip emperor_plots

map.e500.fmt.fmt.fmt.txt binary_jaccard_pc.txt

Any help to solve this visualization error will be useful! final_plot.zip

ElDeveloper commented 4 years ago

@MrX-NGS would you be able to run this using the latest version of QIIME2 and see if the same problem persists? We no longer provide support for QIIME 1.9.1.