DEICODE toy tutorial not working in qiime2-amplicon-2024.5 version

biocore / gemelli

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

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DEICODE toy tutorial not working in qiime2-amplicon-2024.5 version #100

Open magibc opened 8 hours ago

magibc commented 8 hours ago

Dear @cameronmartino and other developers of DEICODE and Gemelli,

Due to the DEICODE Github is being replaced by Gemelli, I also post here although my original comment can be seen in: https://github.com/biocore/DEICODE/issues/68#issue-2562363609

Thanks in advance for your insights, and comments.

Regards,

Maggie

cameronmartino commented 8 hours ago

Hi @magibc,

The RPCA function as described here and originally released in DEICODE is only maintained in Gemelli and is no longer supported/maintained in the DEICODE repository. Please use Gemelli's RPCA, which should work in the current QIIME2 environments.

Thanks,

Cameron