Enable Experimental Vega export in Emperor plots

biocore / gemelli

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

BSD 3-Clause "New" or "Revised" License

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Enable Experimental Vega export in Emperor plots #86

Closed colinbrislawn closed 4 months ago

colinbrislawn commented 5 months ago

This feature, through, experimental, is helpful!

Is there any way to enable it in the current release on pip?

Here's the feature I'm thinking of from another emperor plot.

cameronmartino commented 4 months ago

@colinbrislawn I am not sure, is that on the Emperor side or on the generation of the qza that Emperor uses to generate the plot? Happy to add it, if it is within the changes made in this repo.

colinbrislawn commented 4 months ago

I'm guessing it's on the Emperor side, though I'm not sure

ElDeveloper commented 4 months ago

Correct, this falls in the realm of Emperor 🐧.

@colinbrislawn the "problem" is that the Vega Export action doesn't currently support exporting Biplots which means that for most CTF/RPCA/PhyloRPCA plots you won't be able to use this feature. Unless you run qiime emperor plot ... --p-ignore-pcoa-features instead of qiime emperor biplot ....

FWIW there's a ticket for this "bug": https://github.com/biocore/emperor/issues/723