Matrix completion - Githubissues

biocore / gneiss

compositional data analysis toolbox

https://biocore.github.io/gneiss/

BSD 3-Clause "New" or "Revised" License

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Open mortonjt opened 7 years ago

mortonjt commented 7 years ago

Need to pass in the SoftImpute module into Gneiss

We'll want

[ ] Cross validation with hyperparameter tuning on the minval
[ ] A really solid model statistic to optimize over (i.e. mse or loglikelihood).
[ ] A new OLS subclass that can perform the ilr-transform on the fly, so that we can actually fit pseudocounts from the matrix completion