Upgrading numpy version

biocore / gneiss

compositional data analysis toolbox

https://biocore.github.io/gneiss/

BSD 3-Clause "New" or "Revised" License

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Upgrading numpy version #278

Closed mortonjt closed 5 years ago

mortonjt commented 5 years ago

This will allow us to upgrade the skbio version

mortonjt commented 5 years ago

ugh .. we are getting a bunch of outdated errors from bokeh + pandas nonsense.

mortonjt commented 5 years ago

ok, turns out that both matplotlib and bokeh haven been updated.

The plots look fine, but the order of which the objects have been plotted has changed.

mortonjt commented 5 years ago

Tests should be passing now. We will want to deprecate all visualizations in gneiss in the near future. The heatmap dendrograms have been pushed to calour and the radial trees have been pushed to empress.

coveralls commented 5 years ago

Coverage remained the same at 96.703% when pulling 187f536ced608e93965ba1c7215006a000b889cd on mortonjt:numpy-upgrade into e615c4c570bf99b7bfe8e29e035cec3fe8497e34 on biocore:master.

mortonjt commented 5 years ago

Alright. Merging.