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biocore / gneiss

compositional data analysis toolbox
https://biocore.github.io/gneiss/
BSD 3-Clause "New" or "Revised" License
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Renaming clades #289

Open mortonjt opened 3 years ago

mortonjt commented 3 years ago

Right now, the y_i renaming of internal nodes is a bit jarring. Perhaps we should enable renaming of only internal nodes that don't have names with something like clade_i.

The one thing to watch out for is internal node duplicates generated from tax2tree.

mortonjt commented 3 years ago

One final comment

  1. This function will be compatible with the output of tax2tree that will enable annotation of internal nodes
  2. This function will eventually deprecate rename_internal_nodes