biocore / improved-octo-waddle

Balanced parentheses succinct data structure in Python
BSD 3-Clause "New" or "Revised" License
6 stars 7 forks source link

Overflow error #57

Open wasade opened 4 months ago

wasade commented 4 months ago

Using a subset of GG2

Screen Shot 2024-06-20 at 5 03 30 PM

$ conda list  
# packages in environment at /Users/dtmcdonald/miniconda3/envs/sk061:
#
# Name                    Version                   Build  Channel
anyio                     4.2.0           py311hecd8cb5_0  
appnope                   0.1.2           py311hecd8cb5_1001  
argon2-cffi               21.3.0             pyhd3eb1b0_0  
argon2-cffi-bindings      21.2.0          py311h6c40b1e_0  
asttokens                 2.4.1                    pypi_0    pypi
async-lru                 2.0.4           py311hecd8cb5_0  
attrs                     23.1.0          py311hecd8cb5_0  
babel                     2.11.0          py311hecd8cb5_0  
beautifulsoup4            4.12.3          py311hecd8cb5_0  
biom-format               2.1.16                   pypi_0    pypi
bleach                    4.1.0              pyhd3eb1b0_0  
brotli-python             1.0.9           py311hcec6c5f_8  
bzip2                     1.0.8                h6c40b1e_6  
ca-certificates           2024.3.11            hecd8cb5_0  
certifi                   2024.6.2        py311hecd8cb5_0  
cffi                      1.16.0          py311h6c40b1e_1  
charset-normalizer        3.3.2                    pypi_0    pypi
click                     8.1.7                    pypi_0    pypi
comm                      0.2.1           py311hecd8cb5_0  
contourpy                 1.2.1                    pypi_0    pypi
cycler                    0.12.1                   pypi_0    pypi
cython                    0.29.37                  pypi_0    pypi
debugpy                   1.6.7           py311hcec6c5f_0  
decorator                 5.1.1              pyhd3eb1b0_0  
defusedxml                0.7.1              pyhd3eb1b0_0  
executing                 2.0.1                    pypi_0    pypi
fonttools                 4.53.0                   pypi_0    pypi
h5py                      3.11.0                   pypi_0    pypi
hdmedians                 0.14.2                   pypi_0    pypi
idna                      3.7             py311hecd8cb5_0  
iow                       0.1.2+144.gc279a11.dirty           dev_0    <develop>
ipykernel                 6.28.0          py311hecd8cb5_0  
ipython                   8.25.0          py311hecd8cb5_0  
jedi                      0.19.1                   pypi_0    pypi
jinja2                    3.1.4           py311hecd8cb5_0  
json5                     0.9.6              pyhd3eb1b0_0  
jsonschema                4.19.2          py311hecd8cb5_0  
jsonschema-specifications 2023.7.1        py311hecd8cb5_0  
jupyter-lsp               2.2.0           py311hecd8cb5_0  
jupyter_client            8.6.0           py311hecd8cb5_0  
jupyter_core              5.5.0           py311hecd8cb5_0  
jupyter_events            0.8.0           py311hecd8cb5_0  
jupyter_server            2.10.0          py311hecd8cb5_0  
jupyter_server_terminals  0.4.4           py311hecd8cb5_1  
jupyterlab                4.0.11          py311hecd8cb5_0  
jupyterlab_pygments       0.1.2                      py_0  
jupyterlab_server         2.25.1          py311hecd8cb5_0  
kiwisolver                1.4.5                    pypi_0    pypi
libcxx                    14.0.6               h9765a3e_0  
libffi                    3.4.4                hecd8cb5_1  
libsodium                 1.0.18               h1de35cc_0  
markupsafe                2.1.3           py311h6c40b1e_0  
matplotlib                3.9.0                    pypi_0    pypi
matplotlib-inline         0.1.7                    pypi_0    pypi
mistune                   2.0.4           py311hecd8cb5_0  
natsort                   8.4.0                    pypi_0    pypi
nbclient                  0.8.0           py311hecd8cb5_0  
nbconvert                 7.10.0          py311hecd8cb5_0  
nbformat                  5.9.2           py311hecd8cb5_0  
ncurses                   6.4                  hcec6c5f_0  
nest-asyncio              1.6.0           py311hecd8cb5_0  
nose                      1.3.7                    pypi_0    pypi
notebook                  7.0.8           py311hecd8cb5_0  
notebook-shim             0.2.3           py311hecd8cb5_0  
numpy                     2.0.0                    pypi_0    pypi
openssl                   3.0.14               h46256e1_0  
overrides                 7.4.0           py311hecd8cb5_0  
packaging                 24.1                     pypi_0    pypi
pandas                    2.2.2                    pypi_0    pypi
pandocfilters             1.5.0              pyhd3eb1b0_0  
parso                     0.8.4                    pypi_0    pypi
pexpect                   4.9.0                    pypi_0    pypi
pillow                    10.3.0                   pypi_0    pypi
pip                       24.0            py311hecd8cb5_0  
platformdirs              3.10.0          py311hecd8cb5_0  
prometheus_client         0.14.1          py311hecd8cb5_0  
prompt-toolkit            3.0.47                   pypi_0    pypi
prompt_toolkit            3.0.43               hd3eb1b0_0  
psutil                    5.9.0           py311h6c40b1e_0  
ptyprocess                0.7.0              pyhd3eb1b0_2  
pure_eval                 0.2.2              pyhd3eb1b0_0  
pycparser                 2.21               pyhd3eb1b0_0  
pygments                  2.18.0                   pypi_0    pypi
pyparsing                 3.1.2                    pypi_0    pypi
pysocks                   1.7.1           py311hecd8cb5_0  
python                    3.11.9               hf27a42d_0  
python-dateutil           2.9.0post0      py311hecd8cb5_2  
python-fastjsonschema     2.16.2          py311hecd8cb5_0  
python-json-logger        2.0.7           py311hecd8cb5_0  
pytz                      2024.1          py311hecd8cb5_0  
pyyaml                    6.0.1           py311h6c40b1e_0  
pyzmq                     25.1.2          py311hcec6c5f_0  
readline                  8.2                  hca72f7f_0  
referencing               0.30.2          py311hecd8cb5_0  
requests                  2.32.3                   pypi_0    pypi
rfc3339-validator         0.1.4           py311hecd8cb5_0  
rfc3986-validator         0.1.1           py311hecd8cb5_0  
rpds-py                   0.10.6          py311hf2ad997_0  
scikit-bio                0.6.1                    pypi_0    pypi
scipy                     1.13.1                   pypi_0    pypi
send2trash                1.8.2           py311hecd8cb5_0  
setuptools                69.5.1          py311hecd8cb5_0  
six                       1.16.0             pyhd3eb1b0_1  
sniffio                   1.3.0           py311hecd8cb5_0  
soupsieve                 2.5             py311hecd8cb5_0  
sqlite                    3.45.3               h6c40b1e_0  
stack-data                0.6.3                    pypi_0    pypi
stack_data                0.2.0              pyhd3eb1b0_0  
terminado                 0.17.1          py311hecd8cb5_0  
tinycss2                  1.2.1           py311hecd8cb5_0  
tk                        8.6.14               h4d00af3_0  
tornado                   6.3.3           py311h6c40b1e_0  
traitlets                 5.14.3          py311hecd8cb5_0  
typing-extensions         4.12.2                   pypi_0    pypi
typing_extensions         4.11.0          py311hecd8cb5_0  
tzdata                    2024.1                   pypi_0    pypi
urllib3                   2.2.2                    pypi_0    pypi
wcwidth                   0.2.13                   pypi_0    pypi
webencodings              0.5.1           py311hecd8cb5_1  
websocket-client          1.8.0           py311hecd8cb5_0  
wheel                     0.43.0          py311hecd8cb5_0  
xz                        5.4.6                h6c40b1e_1  
yaml                      0.2.5                haf1e3a3_0  
zeromq                    4.3.5                hcec6c5f_0  
zlib                      1.2.13               h4b97444_1