Shotgun pooling UI

[ElDeveloper]

Do not review yet, I want to run the tests and see what's working so far.

[ElDeveloper]

Most of the work is done here, however I have not been able to get the system up an running locally so I can only test through Travis. If someone could lend a hand (✋) by pulling this and testing it that would be awesome!

[josenavas]

@ElDeveloper these are the errors that came up:

/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/requests/packages/urllib3/connection.py:303: SubjectAltNameWarning: Certificate for localhost has no `subjectAltName`, falling back to check for a `commonName` for now. This feature is being removed by major browsers and deprecated by RFC 2818. (See https://github.com/shazow/urllib3/issues/497 for details.)
  SubjectAltNameWarning
EEEE
======================================================================
ERROR: test_get (__main__.TestPMShotgunPool)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/tornado/testing.py", line 136, in __call__
    result = self.orig_method(*args, **kwargs)
  File "knimin/tests/test_pm_shotgun_pool_handlers.py", line 116, in test_get
    response = self.get("/pm_shotgun_pool/?plate_id=%s" % nid)
  File "/Users/jose/qiime_software/labadmin/knimin/tests/tornado_test_base.py", line 51, in get
    return self.fetch(url, method='GET', headers=headers)
  File "/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/tornado/testing.py", line 405, in fetch
    self.http_client.fetch(self.get_url(path), self.stop, **kwargs)
AttributeError: 'TestPMShotgunPool' object has no attribute 'http_client'

======================================================================
ERROR: test_get_not_authed (__main__.TestPMShotgunPool)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/tornado/testing.py", line 136, in __call__
    result = self.orig_method(*args, **kwargs)
  File "knimin/tests/test_pm_shotgun_pool_handlers.py", line 110, in test_get_not_authed
    response = self.get('/pm_shotgun_pool/?plate_id=1')
  File "/Users/jose/qiime_software/labadmin/knimin/tests/tornado_test_base.py", line 51, in get
    return self.fetch(url, method='GET', headers=headers)
  File "/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/tornado/testing.py", line 405, in fetch
    self.http_client.fetch(self.get_url(path), self.stop, **kwargs)
AttributeError: 'TestPMShotgunPool' object has no attribute 'http_client'

======================================================================
ERROR: test_post (__main__.TestPMShotgunPool)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/tornado/testing.py", line 136, in __call__
    result = self.orig_method(*args, **kwargs)
  File "knimin/tests/test_pm_shotgun_pool_handlers.py", line 138, in test_post
    response = self.post('/pm_shotgun_pool/' % '&'.join(args), data=data)
TypeError: not all arguments converted during string formatting

======================================================================
ERROR: test_post_not_authed (__main__.TestPMShotgunPool)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/tornado/testing.py", line 136, in __call__
    result = self.orig_method(*args, **kwargs)
  File "knimin/tests/test_pm_shotgun_pool_handlers.py", line 126, in test_post_not_authed
    response = self.post('/pm_shotgun_pool/' % '&'.join(args), data=data)
TypeError: not all arguments converted during string formatting

----------------------------------------------------------------------
Ran 4 tests in 2.351s

FAILED (errors=4)

[ElDeveloper]

Thanks @josenavas, just pushed a few changes. Note that I haven't been able to fully test the post method, hence the self.fail().

[josenavas]

Moving forward:

/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/requests/packages/urllib3/connection.py:303: SubjectAltNameWarning: Certificate for localhost has no `subjectAltName`, falling back to check for a `commonName` for now. This feature is being removed by major browsers and deprecated by RFC 2818. (See https://github.com/shazow/urllib3/issues/497 for details.)
  SubjectAltNameWarning
..FWARNING:tornado.general:tornado.autoreload started more than once in the same process
WARNING:tornado.access:405 POST /pm_shotgun_pool/minimum-concentration=1&floor-concentration=1&total-quantity=10&plate-id=4&plate-name=Some%20Name&qpcr-machine=bob (127.0.0.1) 2.83ms
FWARNING:tornado.general:tornado.autoreload started more than once in the same process
WARNING:tornado.access:405 POST /pm_shotgun_pool/minimum-concentration=1&floor-concentration=1&total-quantity=10&plate-id=1&plate-name=Some%20Name&qpcr-machine=bob (127.0.0.1) 1.95ms

======================================================================
FAIL: test_post (__main__.TestPMShotgunPool)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/tornado/testing.py", line 136, in __call__
    result = self.orig_method(*args, **kwargs)
  File "knimin/tests/test_pm_shotgun_pool_handlers.py", line 130, in test_post
    self.assertEqual(response.code, 200)
AssertionError: 405 != 200

======================================================================
FAIL: test_post_not_authed (__main__.TestPMShotgunPool)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/jose/.virtualenvs/labadmin/lib/python2.7/site-packages/tornado/testing.py", line 136, in __call__
    result = self.orig_method(*args, **kwargs)
  File "knimin/tests/test_pm_shotgun_pool_handlers.py", line 117, in test_post_not_authed
    self.assertEqual(response.code, 403)
AssertionError: 405 != 403

----------------------------------------------------------------------
Ran 4 tests in 2.383s

FAILED (failures=2)

[ElDeveloper]

Thanks, I'm not sure where the 405 is coming from, just added a print statement, to see what's going on, will check on it in the morning.

[ElDeveloper]

This should be ready for review, @wasade and I pair-programmed a part of this. As noted by @josenavas format_pooling_echo_pick_list does not exist yet, so once that function exists, we can appropriately test the post method here.

[josenavas]

Failures here are unrelated

[josenavas]

Since there has been 2 devs pair-programming this + 1 reviewer I think this is reviewed enough

[ElDeveloper]

Thanks for the help @josenavas & @wasade!