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biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing
MIT License
8 stars 16 forks source link

Fix raw_reads count extraction. #124

Closed charles-cowart closed 1 year ago

charles-cowart commented 1 year ago

Simplest fix. Assumes we can always multiply the number of reads by 2. Does not pull raw_reads from fastp JSON files. raw_reads count extraction previously was accounting only for half of the reads.

charles-cowart commented 1 year ago

@antgonza @mmbryant23 ready for review!

antgonza commented 1 year ago

Fantastic, thank you! I'll wait to the qiita PR to be merged (after files are renamed) and this PR is cleaned up accordingly!