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biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing
MIT License
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amplicon notebook: error should be raised when plate map and notebook project names do not match #125

Closed mmbryant23 closed 8 months ago

mmbryant23 commented 1 year ago

We would like the notebook to raise an error when the Project Name in the 384-well plate map does not match the Project_Name in the plate processing information in Step 2 of the notebook.

Currently if they are different, it appears like the notebook uses the Project Name in the 384-well plate map to generate the project_name field in the pre-preparation file (not the Project Name field in the notebook). If that project name is wrong, that incorrect information is carried through to the pre-preparation file output.

We’d like to instate a check to make sure that the Project Name(s) in the 384-well plate maps match the Project_Name(s) in the plate processing information input in step 2 of the notebook. This will ensure that both sources are consistent and the pre-preparation file project_name matches both sources.

RodolfoSalido commented 1 year ago

It is worth noting that we are hoping to move towards a notebook interface where plate_maps are imported directly into the notebook from the VisionMate output files, completely circumventing the Plate Compression spreadsheet, so discrepancies like this will be avoided in the near future.

-Rodolfo

On May 16, 2023, at 10:05 AM, mmbryant23 @.***> wrote:

We would like the notebook to raise an error when the Project Name in the 384-well plate map does not match the Project_Name in the plate processing information in Step 2 of the notebook.

Currently if they are different, it appears like the notebook uses the Project Name in the 384-well plate map to generate the project_name field in the pre-preparation file (not the Project Name field in the notebook). If that project name is wrong, that incorrect information is carried through to the pre-preparation file output.

We’d like to instate a check to make sure that the Project Name(s) in the 384-well plate maps match the Project_Name(s) in the plate processing information input in step 2 of the notebook. This will ensure that both sources are consistent and the pre-preparation file project_name matches both sources.

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