metagenomics_pooling_notebook: Assay type needs to be changed to 'Metagenomic' replacing 'Metagenomics' in Sample Sheet Generation

biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

MIT License

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Closed caiemmtri closed 11 months ago

caiemmtri commented 1 year ago

The SPP currently expects the sample sheet 'Assay' to contain 'Metagenomic' and the pooling notebook currently expects the assay to be 'Metagenomics'

In the metagenomics_pooling_notebook, Write DataFrame to file, Step 2: format sample sheet data

metadata = { .... 'Assay': 'Metagenomic', }

Currently outputs: ErrorMessage: Metagenomic is not a supported Assay

= The metagenomics_pooling_notebook needs to be changed to a 'Metagenomic' Assay

charles-cowart commented 1 year ago

Confirmed _METAGENOMICS const is set to 'Metagenomics' in the current master and tests.