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biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing
MIT License
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Replicate updates #134

Closed charles-cowart closed 1 year ago

charles-cowart commented 1 year ago

Replicates functionality updated to observe two lab-conventions:

  1. contains_replicates column in pre-prep file and sample-sheets will either be all True, or all False. There will never be a set of projects in the Bioinformatics section of a sample-sheet where one project is True and the other is False. The entire column in a pre-prep file will be one value or the other. Mixed cases will raise an Error.
  2. Demuxing needs to be done by plate only, rather than by plate and project. This is because of 1) and because of expectation.
charles-cowart commented 1 year ago

It looks like an issue with installing Qiita as a dependency. I'll take a look in the morning.