biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing
MIT License
8 stars 16 forks source link

Tellseq syndna notebook #163

Closed AmandaBirmingham closed 9 months ago

AmandaBirmingham commented 9 months ago

Adds a temporary notebook to calculate syndna masses/volumes and generate a syndna picklist, simply using the functions @RodolfoSalido has already added to metapool.py. This notebook will be retired once tellseq has its own notebook/pipeline to generate picklists and sample sheets. Very small refactors to metapool.add_syndna to replace hard-coded column names with string constants so they can be referenced in the notebook.