It would speed things up considerably w/in SPP if seqpro and counts.py could accept a file containing sequence counts for a directory of fastq files. Instead of counting sequences in every file sequentially using seqtk, SPP could count them in parallel during their creation. The file should be optional and the current behavior should stay as the default if the file isn't provided.
It would speed things up considerably w/in SPP if seqpro and counts.py could accept a file containing sequence counts for a directory of fastq files. Instead of counting sequences in every file sequentially using seqtk, SPP could count them in parallel during their creation. The file should be optional and the current behavior should stay as the default if the file isn't provided.