Once we have 16S runs going through the updated pipeline, we should update this function ( metapool.prep.preparations_for_run) and corresponding script (metapool/scripts/seqpro) to work with 16S data. Currently we are generating the preps from amplicon-pooling.ipynb but it would be better to do this here because we'll have access to the runid, instrument model, run_prefix, etc.
Once we have 16S runs going through the updated pipeline, we should update this function ( metapool.prep.preparations_for_run) and corresponding script (metapool/scripts/seqpro) to work with 16S data. Currently we are generating the preps from amplicon-pooling.ipynb but it would be better to do this here because we'll have access to the runid, instrument model, run_prefix, etc.
This should be addressed after #23.