search

biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing
MIT License
8 stars 16 forks source link

Add sample sheet validation #3

Closed ElDeveloper closed 3 years ago

ElDeveloper commented 3 years ago

This PR adds code to validate sample sheets and a short notebook to do this.

ElDeveloper commented 3 years ago

Ready for review @antgonza. Thanks! Note that the bulk of the changes are from example sample sheets that I added for testing. The majority of the code can be found in metapool.py and in test_metapool.py

ElDeveloper commented 3 years ago

Thanks so much! Can you check you have admin access in your @charles-cowart account?

antgonza commented 3 years ago

Thank you @ElDeveloper and @charles-cowart for working on this. I'm just wondering if it would be good to actually run pep8 in here? If yes, what about adding an issue about it?

ElDeveloper commented 3 years ago

Added, thanks @antgonza