Add support for metatranscriptomics in samplesheet generator.

biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

MIT License

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Add support for metatranscriptomics in samplesheet generator. #70

Closed RodolfoSalido closed 2 years ago

RodolfoSalido commented 2 years ago

The current samplesheet generator doesn't allow for the Assay description to be "Metatranscriptomics".

ErrorMessage: Metatranscriptomics is not a supported Assay

Assay is a standard parameter in the [Header] section of sample sheets. I'm not sure if bcl2fastq would complain if it saw 'Metatranscriptomics' in the Assay field.

charles-cowart commented 2 years ago

@RodolfoSalido the pipeline uses bcl-convert right now, just an FYI.

antgonza commented 2 years ago

solved here https://github.com/biocore/metagenomics_pooling_notebook/pull/72