Added new functions to metagenomics_pipeline_MiniPiconorm jupyter notebook

biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

MIT License

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Added new functions to metagenomics_pipeline_MiniPiconorm jupyter notebook #78

Closed RodolfoSalido closed 2 years ago

RodolfoSalido commented 2 years ago

Added gDNA_dilution_check(), find_threshold(), and autopool() for MiniPico normalized pooling pipeline.

RodolfoSalido commented 2 years ago

Re-estructured the metagenomics_pipeline_MiniPiconorm notebook. Deleted a bunch of unnecessary modules and streamlined the flow of the notebook.

charles-cowart commented 2 years ago

@RodolfoSalido Ty Rodolfo, I'll review and merge and polish and merge again. I think going forward, we'll have a separate dev branch that you and I can merge to, and once we're satisfied we can push to master.

charles-cowart commented 2 years ago

merged with https://github.com/charles-cowart/metagenomics_pooling_notebook.git merge_rodolfo branch instead.