Fix raw_reads column in prep-info output

biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

MIT License

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Fix raw_reads column in prep-info output #83

Closed charles-cowart closed 1 year ago

charles-cowart commented 2 years ago

raw_reads column is blank in prep-info-file output, at least in some cases. Testing this fix in CI against Qiita.

charles-cowart commented 1 year ago

@antgonza The other small set of fixes in this PR were already incorporated into the master branch, but remains one important fix for seqpro binary that should go in as well. Would you mind please reviewing? Sorry for the short notice.

charles-cowart commented 1 year ago

Closing. The primary change https://github.com/biocore/metagenomics_pooling_notebook/blob/99f44710c7f08a729c2831e85fb87543a716b7fb/metapool/scripts/seqpro.py#L50-L51 was incorporated into another PR and merged.