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biocore / metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing
MIT License
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New and unexpected columns in plate metadata. #86

Closed charles-cowart closed 1 year ago

charles-cowart commented 1 year ago

Added two new expected columns to plate-metadata: 'TM300 8 Tool' and 'TM50 8 Tool'. Updated code/tests to support new unexpected columns in plate-metadata.

This is a work in progress. Plate-metadata-related code checks out and all tests pass. Unexpected columns do appear in plate metadata objects; I am confirming they appear everywhere else they need to.

charles-cowart commented 1 year ago

Current status: CI is passing and amplicon_samplesheet_generator was updated to MacKenzie's latest version. TODOs: Apply feedback, and change 'tm300_8_tool' and 'tm50_8_tool' in the script to be 'TM300 8 Tool' and 'TM50 8 Tool'.

charles-cowart commented 1 year ago

@antgonza Feedback considered and column names in script changed to 'TM300 8 Tool' and 'TM50 8 Tool'. Confirmed extra metadata columns should carry through the merging of data frames to final output. Ready for review.