biocore / mg-scripts

Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal
BSD 3-Clause "New" or "Revised" License
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Fixes issue with fastq.gz files having _I1_ etc. #109

Open charles-cowart opened 10 months ago

charles-cowart commented 10 months ago

Fixes issue with fastq.gz files having I1, R1, etc. in parts of the file-name other than the expected location. This fix is currently working in qiita-rc.

coveralls commented 10 months ago

Pull Request Test Coverage Report for Build 6698670902


Changes Missing Coverage Covered Lines Changed/Added Lines %
sequence_processing_pipeline/FastQCJob.py 18 21 85.71%
<!-- Total: 18 21 85.71% -->
Totals Coverage Status
Change from base Build 6632678122: -0.1%
Covered Lines: 2073
Relevant Lines: 2354

💛 - Coveralls