biocore / mg-scripts

Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal
BSD 3-Clause "New" or "Revised" License
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dynamically adjust various run parameters based on bin sizes #136

Closed charles-cowart closed 7 months ago

charles-cowart commented 7 months ago

Proposed changes to make gres value either 2 or 4, based on size of the largest HDS file. Need @antgonza to confirm this is the desired behavior. Tests updated, bu no additional tests yet.

coveralls commented 7 months ago

Pull Request Test Coverage Report for Build 8330521702

Details


Changes Missing Coverage Covered Lines Changed/Added Lines %
sequence_processing_pipeline/NuQCJob.py 12 19 63.16%
<!-- Total: 24 31 77.42% -->
Totals Coverage Status
Change from base Build 8286376556: -0.2%
Covered Lines: 2423
Relevant Lines: 2763

💛 - Coveralls
charles-cowart commented 7 months ago

@antgonza ready for review!