biocore / mg-scripts

Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal
BSD 3-Clause "New" or "Revised" License
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Production updates #144

Closed charles-cowart closed 4 months ago

charles-cowart commented 4 months ago

Changes made during initial runs on production Qiita. Functionality that overwrites tube-ids for sample-names in prep-info files migrated out of GenPrepFileJob. This makes for easier restarting of jobs in a current area of change. test_NuQCJob.py got accidentally run through Black, but the end result looks cleaner so I kept it.

coveralls commented 4 months ago

Pull Request Test Coverage Report for Build 9619073440

Details


Files with Coverage Reduction New Missed Lines %
sequence_processing_pipeline/tests/test_NuQCJob.py 1 92.11%
<!-- Total: 1 -->
Totals Coverage Status
Change from base Build 9575588914: 0.03%
Covered Lines: 2062
Relevant Lines: 2353

💛 - Coveralls
coveralls commented 4 months ago

Pull Request Test Coverage Report for Build 9652762046

Details


Files with Coverage Reduction New Missed Lines %
sequence_processing_pipeline/tests/test_NuQCJob.py 1 92.14%
<!-- Total: 1 -->
Totals Coverage Status
Change from base Build 9575588914: 0.04%
Covered Lines: 2064
Relevant Lines: 2355

💛 - Coveralls