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biocore / micronota

annotation pipeline for microbial genomes and metagenomes
BSD 3-Clause "New" or "Revised" License
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WIP: big change #43

Closed RNAer closed 8 years ago

RNAer commented 8 years ago

The changes include:

  1. modify travis to test both linux and osx
  2. add uniref database prep
  3. add EMBL parser
  4. add info command
  5. fix the tests of pressers for infernal and hmmer

I should stop adding more things. @mortonjt , it is ready for review/merge. Travis passed.

mortonjt commented 8 years ago

Also, don't forget to update the README. Since this PR is massive, we can do it in the near future.

mortonjt commented 8 years ago

FYI - we need some sort of test system. It'll make it more manageable to catch these sorts of typos in the future.

RNAer commented 8 years ago

yah!

On Wed, Feb 17, 2016 at 3:43 PM, Jamie Morton notifications@github.com wrote:

Merged #43 https://github.com/biocore/micronota/pull/43.

— Reply to this email directly or view it on GitHub https://github.com/biocore/micronota/pull/43#event-554371737.

RNAer commented 8 years ago

yes. we can do it with this new prepare_db(), it's tedious to prepare test data...

On Wed, Feb 17, 2016 at 3:44 PM, Jamie Morton notifications@github.com wrote:

FYI - we need some sort of test system. It'll make it more manageable to catch these sorts of typos in the future.

— Reply to this email directly or view it on GitHub https://github.com/biocore/micronota/pull/43#issuecomment-185461806.