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biocore / micronota

annotation pipeline for microbial genomes and metagenomes
BSD 3-Clause "New" or "Revised" License
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Cache #64

Closed mortonjt closed 8 years ago

mortonjt commented 8 years ago

Fixed most of the stylistic changes. However, this will fail, because it is importing sam.

BUT - sam is actually required for the parsers to work. Not sure how to get travis to ignore this.

RNAer commented 8 years ago

you have to import it globally to make it work. see embl as an example: https://github.com/biocore/micronota/blob/master/micronota/__init__.py

On Tue, Mar 15, 2016 at 10:21 AM, Jamie Morton notifications@github.com wrote:

Fixed most of the stylistic changes. However, this will fail, because it is importing sam.

BUT - sam is actually required for the parsers to work. Not sure how to get travis to ignore this.

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mortonjt commented 8 years ago

:fireworks: tests passing. Ready for review.

mortonjt commented 8 years ago

Thanks!

On Tue, Mar 15, 2016 at 1:19 PM, Zech Xu notifications@github.com wrote:

Merged #64 https://github.com/biocore/micronota/pull/64.

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