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biocore / micronota

annotation pipeline for microbial genomes and metagenomes
BSD 3-Clause "New" or "Revised" License
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Parser cmscan #74

Closed sjanssen2 closed 8 years ago

sjanssen2 commented 8 years ago

I added code to parse the output produced by the program CMscan of the Infernal package. Test, outputs as well as a unit-test module is added, too.

coveralls commented 8 years ago

Coverage Status

Coverage decreased (-2.1%) to 83.859% when pulling 703f42437c3f0b9165710a17151d0574a94e5fc1 on sjanssen2:parser-cmscan into 70506324bc7460af9f4aa0968fb62886907a1b84 on biocore:master.

mortonjt commented 8 years ago

It may not be necessary to include a writer in this PR. @RNAer what do you think?

RNAer commented 8 years ago

nope, we don't need writers.

coveralls commented 8 years ago

Coverage Status

Coverage decreased (-7.09%) to 78.904% when pulling d1e33418d65d6023a5bca7ce36d40181da6e5eb8 on sjanssen2:parser-cmscan into 70506324bc7460af9f4aa0968fb62886907a1b84 on biocore:master.