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biocore / micronota

annotation pipeline for microbial genomes and metagenomes
BSD 3-Clause "New" or "Revised" License
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migrate from burrito to dumpling #75

Closed RNAer closed 8 years ago

RNAer commented 8 years ago

also includes:

  1. remove support for py34
  2. fix diamond SAM parsing bug (the sam parser remains but is not used so far)
  3. update sphinx config.py
  4. set to use new skbio new interval metadata
  5. other small changes
  6. rm cache temporarily
coveralls commented 8 years ago

Coverage Status

Coverage decreased (-11.02%) to 74.974% when pulling a8ec31dbafeea33c2e04865a16f4c183f4640bdd on RNAer:bf into 70506324bc7460af9f4aa0968fb62886907a1b84 on biocore:master.

mortonjt commented 8 years ago

The tests are passing, which is good.

We need to add a few tests tomorrow. Otherwise 👍

josenavas commented 8 years ago

Just curious - what is dumpling?

RNAer commented 8 years ago

https://github.com/rnaer/dumpling a replace for burrito as burrito is obsoleted and hard to use.

josenavas commented 8 years ago

If it is a replacement of burrito, why is it not living in biocore? specially if it is a dependency of micronota @antgonza @gregcaporaso @jairideout thoughts - which is the future of burrito?

RNAer commented 8 years ago

i am ok with moving into biocore. any comments are welcome : )

On Wed, Apr 27, 2016 at 11:38 PM, Jose Navas notifications@github.com wrote:

If it is a replacement of burrito, why is it not living in biocore? specially if it is a dependency of micronota @antgonza https://github.com/antgonza @gregcaporaso https://github.com/gregcaporaso @jairideout https://github.com/jairideout thoughts - which is the future of burrito?

— You are receiving this because you authored the thread. Reply to this email directly or view it on GitHub https://github.com/biocore/micronota/pull/75#issuecomment-215325179

coveralls commented 8 years ago

Coverage Status

Coverage decreased (-8.02%) to 77.978% when pulling 3c3476ca7d3e742d9116ea8f1f391803a5ea3f05 on RNAer:bf into 70506324bc7460af9f4aa0968fb62886907a1b84 on biocore:master.