search

biocore / microprot

structural annotation pipeline for microbial genomes and metagenomes
BSD 3-Clause "New" or "Revised" License
1 stars 6 forks source link

MMSeqs2 install #28

Closed tkosciol closed 7 years ago

tkosciol commented 7 years ago

we need to build MMSeqs2 (https://github.com/soedinglab/mmseqs2), as instructed in the repo. Currently, it is here: /projects/microprot/tools/MMseqs2

On barnacle it currently does not compile. Jeff had a look into it and he replied:

You will need to try the avx2 static version.  
It is installing cluster wide, even though you could have unpacked to local directory.  
Module is created for it as well.  We can readdress install and compilation at a later time.
sjanssen2 commented 7 years ago

here is a way to compile it on barnacle: 1) download the current source from github 2) edit file cmake/CheckSSEFeatures.cmake by replacing -march=native by -march=corei7 3) compile as described in the README