snakemake: edge cases and extensions

biocore / microprot

structural annotation pipeline for microbial genomes and metagenomes

BSD 3-Clause "New" or "Revised" License

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Closed tkosciol closed 7 years ago

tkosciol commented 7 years ago

what happens if we run out of sequence at some point? e.g. if the whole sequence hits a PDB record and there is nothing left for subsequent steps?
create a function to (possibly) make subdirectories for outputs e.g. input: 'results/subdir({seq})/01-search_pdb/{seq}.out' def subdir(dir_name): return dir_name

tkosciol commented 7 years ago

first point addressed by PR #46 second issue in #52