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biocore / microprot

structural annotation pipeline for microbial genomes and metagenomes
BSD 3-Clause "New" or "Revised" License
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keep output files in ffindex format #62

Open tkosciol opened 7 years ago

tkosciol commented 7 years ago

Keep the contents of each folder (AB/, CM/, PDB/, log/) as a ffindex database.
This way we will have 2 files per folder, instead of thousands.

tkosciol commented 7 years ago

script to do it periodically. i.e. generate files as they are generated now, so that it is easier to transfer them to Simons. Once they're transferred, run a script which takes all a3m, etc. files and puts them in an ffindex database.

Have another script to read specific sequences from ffindex.

tkosciol commented 7 years ago

ffindex example: https://github.com/soedinglab/ffindex_soedinglab