Around 0.1-0.2% of jobs finish successfully without any complaints in either output or logs, but values from per-gene log index file do not get propagated to the microprot_db.index.
Possible source of the problem is function snakemake_helpers.append_db()
examples:
GRAMNEG_T1D_3301
GRAMNEG_T1D_4292
GRAMNEG_T1D_6724
GRAMNEG_T1D_7144
GRAMNEG_T1D_7471
all targets are in: /projects/microprot/results/Broad_targets_gramneg_T1D
Around 0.1-0.2% of jobs finish successfully without any complaints in either output or logs, but values from per-gene log index file do not get propagated to the
microprot_db.index.Possible source of the problem is function
snakemake_helpers.append_db()examples:
/projects/microprot/results/Broad_targets_gramneg_T1D