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biocore / microsetta-private-api

A private microservice to support The Microsetta Initiative
BSD 3-Clause "New" or "Revised" License
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Unable to create kits #472

Open wasade opened 1 year ago

wasade commented 1 year ago

The kit creation function makes expectations about the barcodes present in the system. It looks like there are barcodes which violate these expectations now.

[2022-10-28 10:29:36 -0700] [32629] [ERROR] Exception on /api/admin/create/kits [POST]
Traceback (most recent call last):
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/flask/app.py", line 2446, in wsgi_app
    response = self.full_dispatch_request()
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/flask/app.py", line 1951, in full_dispatch_request
    rv = self.handle_user_exception(e)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/flask/app.py", line 1820, in handle_user_exception
    reraise(exc_type, exc_value, tb)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/flask/_compat.py", line 39, in reraise
    raise value
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/flask/app.py", line 1949, in full_dispatch_request
    rv = self.dispatch_request()
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/flask/app.py", line 1935, in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/connexion/decorators/decorator.py", line 48, in wrapper
    response = function(request)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/connexion/decorators/security.py", line 327, in wrapper
    return function(request)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/connexion/decorators/uri_parsing.py", line 144, in wrapper
    response = function(request)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/connexion/decorators/validation.py", line 184, in wrapper
    response = function(request)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/connexion/decorators/response.py", line 103, in wrapper
    response = function(request)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/connexion/decorators/parameter.py", line 121, in wrapper
    return function(**kwargs)
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/microsetta_private_api/admin/admin_impl.py", line 260, in create_kits
    kits = admin_repo.create_kits(number_of_kits, number_of_samples,
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/microsetta_private_api/repo/admin_repo.py", line 764, in create_kits
    self._generate_novel_barcodes(
  File "/Users/api_user/miniconda3/envs/microsetta-private-api/lib/python3.8/site-packages/microsetta_private_api/repo/admin_repo.py", line 831, in _generate_novel_barcodes
    cur.execute("SELECT max(right(barcode,8)::integer) "
psycopg2.errors.InvalidTextRepresentation: invalid input syntax for type integer: "M2434948"