issues
search
biocore
/
microsetta-public-api
A public microservice to support The Microsetta Initiative
BSD 3-Clause "New" or "Revised" License
2
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Internationalization
#111
charles-cowart
opened
2 years ago
2
Added scipy version requirement, docs updated.
#110
charles-cowart
opened
2 years ago
0
Update microbiome maps to provide translated legend text
#109
wasade
opened
3 years ago
0
The microbiome maps (pcoas) need to accept a language tag
#108
wasade
opened
3 years ago
0
increase point size
#107
wasade
closed
3 years ago
0
Send a formatted PNG
#106
wasade
closed
3 years ago
3
allow neighbors kw
#105
gwarmstrong
closed
3 years ago
1
adjust config schema to support cached k nearest neighbors
#104
gwarmstrong
opened
3 years ago
0
Cache beta
#103
wasade
closed
3 years ago
10
[Optimization] Beta caching
#102
wasade
closed
3 years ago
0
[Optimization] Cache the ranks subsample
#101
wasade
opened
3 years ago
0
new endpoint returning a sample's features matching collapsed taxonomy for empress
#100
gwarmstrong
opened
3 years ago
0
NEW check for sample/dataset existence
#99
gwarmstrong
closed
3 years ago
0
Add endpoint to list datasets a given sample ID is present in
#98
gwarmstrong
opened
3 years ago
0
Connect rare unique
#97
wasade
opened
3 years ago
1
Taxonomy bp tree to genus tree
#96
gwarmstrong
closed
2 years ago
8
Rare unique step2
#95
wasade
closed
3 years ago
0
TST/ENH: set sample counts for each taxon
#94
wasade
closed
3 years ago
0
FIX make encoding safe for numpy ints
#93
gwarmstrong
closed
3 years ago
0
Background loading in thread
#92
gwarmstrong
closed
3 years ago
4
FIX update empress version
#91
gwarmstrong
closed
3 years ago
0
Pin empress version to 1.1.0
#90
gwarmstrong
closed
3 years ago
0
taxa counts
#89
wasade
closed
3 years ago
6
Add load logging
#88
gwarmstrong
closed
3 years ago
1
EPIC: support queries on quantitites needed for results page
#87
gwarmstrong
opened
3 years ago
0
Make metadata endpoints dataset specific
#86
gwarmstrong
closed
3 years ago
9
Results Page Taxonomy Aggregation
#85
dhakim87
opened
3 years ago
0
NEW Add empress for taxonomy
#84
gwarmstrong
closed
3 years ago
5
BUG: filtering ranks rather differently from the proof of concept
#83
wasade
closed
3 years ago
0
Creat an endpoint for serving `Empress` objects.
#82
gwarmstrong
closed
3 years ago
0
Maintain an `Empress` object per taxonomy/phylogeny for serving empress info
#81
gwarmstrong
closed
3 years ago
0
support phylogeny data type on the public API
#80
gwarmstrong
opened
3 years ago
0
WIP: Metadata to datasets
#79
wasade
closed
3 years ago
2
Dataset detail
#78
wasade
closed
3 years ago
0
Revise error checking
#77
wasade
opened
3 years ago
0
Include information on unique / rare taxa
#76
wasade
opened
3 years ago
0
Add endpoint for obtaining number of taxa at a given level
#75
wasade
opened
3 years ago
0
Closest neighbor matching criteria
#74
gwarmstrong
opened
3 years ago
2
Initial rank support
#73
wasade
closed
3 years ago
1
Add endpoint for taxa ranks
#72
wasade
opened
3 years ago
6
Support obtaining detail about a dataset
#71
wasade
closed
3 years ago
1
Allow taxonomy features to be superset of abundance table
#70
wasade
closed
3 years ago
1
Add k nearest api
#69
gwarmstrong
closed
3 years ago
0
NEW add distance matrix backend
#68
gwarmstrong
closed
3 years ago
1
NEW endpoint for querying metadata given sample ID's
#67
gwarmstrong
closed
3 years ago
0
/metadata/sample_ids does not generalize to multiple datasets
#66
gwarmstrong
opened
3 years ago
1
Add metadata endpoint to query metadata for a given set of sample ID's
#65
gwarmstrong
closed
3 years ago
0
Add Endpoint to query k closest samples to given sample
#64
gwarmstrong
closed
3 years ago
0
List metadata available categories and available datasets
#63
gwarmstrong
closed
3 years ago
1
Create endpoint to list available metadata categories
#62
gwarmstrong
closed
3 years ago
1
Next