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biocore / my-microbes

A set of tools for delivering personal microbiome results to individuals participating in microbiome sequencing studies.
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SyntaxError highlighted by test_util.py #118

Closed wasade closed 11 years ago

wasade commented 11 years ago

Testing /Users/mcdonadt/my-microbes/tests/test_util.py:

Traceback (most recent call last): File "/Users/mcdonadt/my-microbes/tests/test_util.py", line 29, in from my_microbes.util import (_collect_alpha_diversity_boxplot_data, File "/Users/mcdonadt/my-microbes/my_microbes/util.py", line 339 body_site_otu_table_f, \ ^ SyntaxError: invalid syntax

wasade commented 11 years ago

Well... actually, more serious:

07:50:42 (mcdonadt@compy):scripts$ python personal_results.py -h Traceback (most recent call last): File "personal_results.py", line 19, in from my_microbes.util import create_personal_results File "/Users/mcdonadt/my-microbes/my_microbes/util.py", line 339 body_site_otu_table_f, \ ^ SyntaxError: invalid syntax

wasade commented 11 years ago

Looks like this is due to python2.6. Is QIIME actually dependent on py2.7 or just on paper?

jairideout commented 11 years ago

Looks like a with statement with multiple files requires python 2.7. QIIME depends on python 2.6 or higher, so I'll fix this in my-microbes. As a workaround, please use python 2.7 for now.