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biocore / my-microbes

A set of tools for delivering personal microbiome results to individuals participating in microbiome sequencing studies.
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Add script options for rarefied and split OTU tables. #75

Closed jairideout closed 11 years ago

jairideout commented 11 years ago

For improved performance, personal_results.py should optionally accept a directory of OTU tables that have been rarefied (using single_rarefaction.py) and split by body site. That way, we can do the rarefaction/splitting once instead of each time the script is run, which may be many times if we are running it in parallel.

jairideout commented 11 years ago

Pull request merged; closing.