Currently compare_taxa_summaries.py isn't being run on the self versus other taxa summaries. It needs to in order to ensure that the colors match up between the two plots.
The only reason this is currently working is because of a bug in split_otu_table.py where OTUs with zero counts are kept. As this will likely be fixed in QIIME at some point in the future, we need to fix this issue in my-microbes.
Currently
compare_taxa_summaries.py
isn't being run on the self versus other taxa summaries. It needs to in order to ensure that the colors match up between the two plots.The only reason this is currently working is because of a bug in
split_otu_table.py
where OTUs with zero counts are kept. As this will likely be fixed in QIIME at some point in the future, we need to fix this issue in my-microbes.