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biocore
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my-microbes
A set of tools for delivering personal microbiome results to individuals participating in microbiome sequencing studies.
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Provides access to representative sequences in OTU category significance tables.
#72
jairideout
closed
11 years ago
1
Include more in-depth explanation of OTUs?
#71
jairideout
closed
11 years ago
3
Include explanations for chao1 and shannon?
#70
jairideout
closed
11 years ago
4
Updated alpha rarefaction text to reference menus.
#69
jairideout
closed
11 years ago
3
Fixed alpha diversity metric labels to be titles.
#68
jairideout
closed
11 years ago
1
Rarefied OTU table is now split only once (performance improvement).
#67
jairideout
closed
11 years ago
0
Alpha rarefaction plots - documentation improvements
#66
jairideout
closed
11 years ago
1
Add representative sequence for each OTU in otu_category_significance.py tables
#65
jairideout
closed
11 years ago
1
Alpha diversity boxplots - axis label improvements
#64
jairideout
closed
11 years ago
1
Beta diversity improvements
#63
jairideout
closed
11 years ago
5
Taxa summary plots - x-axis tick spacing
#62
jairideout
closed
11 years ago
3
Taxa summary plots - compare self at different body sites
#61
jairideout
opened
11 years ago
4
self vs. other taxa summary plots - UI improvements
#60
jairideout
closed
11 years ago
1
split_otu_table.py optimization
#59
jairideout
closed
11 years ago
1
single_rarefaction.py is now run only once.
#58
jairideout
closed
11 years ago
0
More unit tests.
#57
jairideout
closed
11 years ago
0
test on IE
#56
jairideout
closed
11 years ago
1
single_rarefaction.py optimization
#55
jairideout
closed
11 years ago
1
Fixed broken unit tests.
#54
jairideout
closed
11 years ago
0
Add explicit time axis for beta diversity plots
#53
ElDeveloper
closed
11 years ago
0
fix for issue 50
#52
gregcaporaso
closed
11 years ago
0
Issue 38
#51
johnchase
closed
11 years ago
0
color rows in otu category significance table to indicate direction of difference
#50
gregcaporaso
closed
11 years ago
2
fix for Issue 46
#49
gregcaporaso
closed
11 years ago
0
Issue 39 - descriptive text updated
#48
gregcaporaso
closed
11 years ago
0
Added unit tests, more refactoring, and some minor cleanup of code.
#47
jairideout
closed
11 years ago
0
otu category significance google links should only contain the name following the double underscore
#46
gregcaporaso
closed
11 years ago
1
fix for issue #44
#45
gregcaporaso
closed
11 years ago
0
create support_data directory for storing files that are run-specific, but useful to keep under version control
#44
gregcaporaso
closed
11 years ago
0
updates to default prefs file
#43
gregcaporaso
closed
11 years ago
0
error in pref files prevents us from changing the color of oral samples
#42
gregcaporaso
closed
11 years ago
0
improve color choices for self v other PCoA and alpha rarefaction
#41
gregcaporaso
closed
11 years ago
0
Miscellaneous fixes
#40
jairideout
closed
11 years ago
0
finalize text for first delivery
#39
jairideout
closed
11 years ago
2
Add missing unit tests
#38
jairideout
closed
11 years ago
2
compile full list of individuals
#37
jairideout
closed
11 years ago
0
personal_results.py fails: with --suppress_otu_category_significance
#36
ElDeveloper
closed
11 years ago
2
personal_results.py fails: with --print_only
#35
ElDeveloper
closed
11 years ago
1
Add explicit time axis to beta diversity plots
#34
ElDeveloper
closed
11 years ago
11
Added all_tests.py.
#33
jairideout
closed
11 years ago
0
Add all_tests.py
#32
jairideout
closed
11 years ago
1
Added generate_participant_table.py.
#31
jairideout
closed
11 years ago
0
Misc. cleanup in preparation for first real run next week.
#30
jairideout
closed
11 years ago
2
Added otu_category_significance.py tables.
#29
jairideout
closed
11 years ago
5
should we rename the repository my-microbes?
#28
gregcaporaso
closed
11 years ago
10
Style/layout improvements.
#27
jairideout
closed
11 years ago
4
Raw data files are now removed by default.
#26
jairideout
closed
11 years ago
0
Added text for synchronized scrolling.
#25
jairideout
closed
11 years ago
0
Add text for synchronized scrolling
#24
jairideout
closed
11 years ago
0
Remove large files from output
#23
jairideout
closed
11 years ago
0
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