shogun conda environment messes up environment variables

biocore / oecophylla

shotgun pipeline

MIT License

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Closed qiyunzhu closed 6 years ago

qiyunzhu commented 6 years ago

That conda environment "oecophylla-shogun", when source-deactivated, destroys all Bash environment variables. Not sure why.

tanaes commented 6 years ago

Reinstall this environment. This was a problem with the previous commands in the taxonomy.sh install script.