This PR adds back in the rule for read mapping of reads back to contigs.
Unlike the previous incarnation, which was restricted to all x all or some x some associations, this allows for arbitrary association of abundance samples to contig samples. In other words, it allows for the case where you have several individuals with many time points, and only want to do read mapping of different time points per individual.
This PR adds back in the rule for read mapping of reads back to contigs.
Unlike the previous incarnation, which was restricted to all x all or some x some associations, this allows for arbitrary association of abundance samples to contig samples. In other words, it allows for the case where you have several individuals with many time points, and only want to do read mapping of different time points per individual.