Traceback (most recent call last):
File "/home/tkosciolek/conda/envs/oecophylla/bin/oecophylla", line 6, in <module>
exec(compile(open(__file__).read(), __file__, 'exec'))
File "/home/tkosciolek/shotgun_pipeline/scripts/oecophylla", line 7, in <module>
run()
File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 722, in __call__
return self.main(*args, **kwargs)
File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 535, in invoke
return callback(*args, **kwargs)
File "/home/tkosciolek/shotgun_pipeline/oecophylla/cli/launch.py", line 406, in install
_install_module(install_scripts[module])
File "/home/tkosciolek/shotgun_pipeline/oecophylla/cli/launch.py", line 98, in _install_module
'following message:\n%s' % output[1])
OSError: Module install failed with following message:
b'\nResolvePackageNotFound: \n - centrifuge 1.0.3 py36pl5.22.0_1\n - perl 5.22.0*\n\n'
I think that module specification in oecophylla/taxonomy/oecophylla-centrifuge.yaml is too specific. Should read centrifuge=1.0.3 not centrifuge=1.0.3=py36pl5.22.0_1
I'm getting an error:
I think that module specification in
oecophylla/taxonomy/oecophylla-centrifuge.yaml
is too specific. Should readcentrifuge=1.0.3
notcentrifuge=1.0.3=py36pl5.22.0_1