biocore / oecophylla

shotgun pipeline
MIT License
11 stars 19 forks source link

taxonomy module won't install #154

Open tkosciol opened 6 years ago

tkosciol commented 6 years ago

I'm getting an error:

Traceback (most recent call last):
  File "/home/tkosciolek/conda/envs/oecophylla/bin/oecophylla", line 6, in <module>
    exec(compile(open(__file__).read(), __file__, 'exec'))
  File "/home/tkosciolek/shotgun_pipeline/scripts/oecophylla", line 7, in <module>
    run()
  File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 722, in __call__
    return self.main(*args, **kwargs)
  File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 697, in main
    rv = self.invoke(ctx)
  File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 1066, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 895, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/home/tkosciolek/conda/envs/oecophylla/lib/python3.5/site-packages/click/core.py", line 535, in invoke
    return callback(*args, **kwargs)
  File "/home/tkosciolek/shotgun_pipeline/oecophylla/cli/launch.py", line 406, in install
    _install_module(install_scripts[module])
  File "/home/tkosciolek/shotgun_pipeline/oecophylla/cli/launch.py", line 98, in _install_module
    'following message:\n%s' % output[1])
OSError: Module install failed with following message:
b'\nResolvePackageNotFound: \n  - centrifuge 1.0.3 py36pl5.22.0_1\n  - perl 5.22.0*\n\n'

I think that module specification in oecophylla/taxonomy/oecophylla-centrifuge.yaml is too specific. Should read centrifuge=1.0.3 not centrifuge=1.0.3=py36pl5.22.0_1