biocore / oecophylla

shotgun pipeline
MIT License
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Improve launch script #98

Closed tanaes closed 7 years ago

tanaes commented 7 years ago

This adds capability to easily launch a 'wet' test run, simply by doing:

oecophylla workflow --test

You can also provide other workflow parameters to test specific things, like testing a particular module:

oecophylla workflow --test qc

or testing in a particular workflow context:

oecophylla workflow --workflow-type torque --cluster-config cluster.json --test qc

what do you think @mortonjt? I went back and forth a ton of times on how best to do this, but this seemed most parsimonious.

tanaes commented 7 years ago

@mortonjt: good ideas, implemented.

tanaes commented 7 years ago

@mortonjt @tkosciol wanna merge?