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biocore / q2-qemistree

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
BSD 2-Clause "Simplified" License
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running the demo pipeline #151

Closed MuBulut closed 2 years ago

MuBulut commented 2 years ago

Hi there, I wanted to run the demo, to check if everything is running well on our servers. I got to the last point, however I could not find the sample meta file: --m-sample-metadata-file path-to-sample-metadata.tsv \ is it possible to upload it for download.

Thanks in advance. Mustafa

MuBulut commented 2 years ago

I would highly appreciate if someone could forward me the sample meta data, since I would love to perform qemistree.

ElDeveloper commented 2 years ago

@MuBulut, that file doesn't exist. I understand the tutorial is a bit misleading. The specific command where this file is mentioned is the q2-empress command. If you want to get more information about empress I suggest reading the tutorial here:

https://github.com/biocore/empress

The "sample-metadata-file" files follow QIIME2's metadata guidelines: https://docs.qiime2.org/2022.2/tutorials/metadata/

Here's an example: https://data.qiime2.org/2022.2/tutorials/moving-pictures/sample_metadata.tsv

Hope this helps, if not feel free to reopen the issue. Thanks so much for your patience.