Made changes to _match.py so don't have to use pandas to_dataframe method. _match.py now uses the input biom table and the corresponding biom table functions to filter, relabel and collapse the table without having to use any pandas functions. Pandas functions are still used on the fingerprints but the file is input as a dataframe so no time consuming functions are used.
Made changes to _match.py so don't have to use pandas to_dataframe method. _match.py now uses the input biom table and the corresponding biom table functions to filter, relabel and collapse the table without having to use any pandas functions. Pandas functions are still used on the fingerprints but the file is input as a dataframe so no time consuming functions are used.