supervised_learning.py verbose output

[wdwvt1]

Supervised learning verbose output is underwhelming (it prints a single string indicating the biom table has been converted). When you dig in to the R code it should be printing a huge amount of information about the decrease in error with the addition of each decision tree etc. Something has gone wrong with the option parsing or with the way the R command line call is being formatted I think.

[gregcaporaso]

@danknights, thoughts on this?

[danknights]

R is producing output; just need appcontroller to print it. Looking into best way to do this.

[gregcaporaso]

You can access StdOut and StdErr in the result object that gets returned from the application controller. See the RNAfold example here: http://pycogent.org/examples/application_controller_framework.html?highlight=application%20controller#summary